CB,
My oldest Tormek is a T7, so I am guessing about the Supergrind 2005. Tormek used at least two housings in that general time period, one with a vertical front, and one with a slant front.
Personally, I have never understood the benefit of measuring from the frame. I generally use the kenjig, which is based on Dutchman's tables and uses the grinding wheel as the reference point. In this case, the model used does not matter.
You will probably want to continue using the Knife Grinders software. In that case: Make sure you are measuring from a consistent point on the frame. I would mark the spot with a piece of electrical tape or mark it with a Sharpie.
You will need to change one of the three variables (Projection, Distance, or bevel angle). I would leave your settings as is on your computer device. When you measure from the top of the support bar to the frame, set your calipers to three millimeters less than indicated by the program. Sharpen a knife and measure the angle. Three mm less should get you close. If the angle is now 13 or 14 degrees, add one millimeter. (-2mm instead of -3mm) Make a label of your final correction.
Follow the same procedure to measure your honing wheel setting.
These procedures should be "one and done", not needing to be done with every knife.
Keep us posted.
Ken